While the mainstream baby stores are starting to carry more organic baby items I find that the selection is still not that great. So I started to look around for more options in our area. Here is what I have found so far (both online and stores):

Baby Naturopathics - online - across Canada and the US
Baby on the Hip - online and in store (Toronto)
Cloth Diaper Clearance - online (based in the US)
Cotton Babies - online (based in the US)
Diaper Days - online (Canada only) and in store (Guelph)
Ella + Elliot - online and in store (Toronto)
Essere Organics - online and in store (Oakville)
Etsy - online
Mom and Baby Boutique - online and in store (Brantford)
Mom Knows Best - online - across Canada and International
Parenting by Nature - online - across Canada and the US